I have tried 2011.4 and 2011.2 versions both 32 and 64bit on WinXP and Win7,
and on all the versions its happaned.
my computers are right-to-left (Hebrew language).
all the fields are aligned to the right, you can see it here: http://www.flickr.com/photos/46856481@N00/6435536139.
the control points appear in the reverse order on the image.
after trying to align the images, its seems that the process going right, but after it opens the fast panorama preview window and nothing is displayed, you can see it here: http://www.flickr.com/photos/46856481@N00/6435536279.
another issue that related is, when I load images and go to control points to add them manually, on the small square zoom that shown display the image from the opposite side of the image, like image is mirrored.
in my opinion it all related to the right-to-left problem.
This is still reproducible in Hugin 2018 (downloaded today) on Windows 10.
The issue with the control point location makes placing them an unnecessarily difficult process.